Basic Information
Locus ID:
Tel5E01G257900
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 241019259 | 241024931 | - | Tel5E01G257900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.07 | 16,344.31 Da | 68.20 | 64.77 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 91 | 135 | 2.6E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 91 | 141 | 2.29E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 72 | 142 | 1.3E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 92 | 134 | 5.3E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 92 | 135 | 13.389211 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 88 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_044401103.1 | RING-H2 finger protein ATL72-like [Triticum aestivum] | 0 |
| Q9SRM0 | RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6KGW9 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_003592 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G257900 |
| Poaceae | Triticum aestivum | 1 | TraesCS5A02G147800.1.cds1 |