Basic Information
Locus ID:
Tel5E01G236500
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
PHD zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 218907680 | 218917104 | + | Tel5E01G236500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 203,528.17 Da | 48.61 | 72.66 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15532 | PHD2_CHD_II | 525 | 566 | 2.36674E-15 | - |
| Pfam | PF02791 | DDT domain | 309 | 364 | 1.4E-12 | IPR018501 |
| Pfam | PF00628 | PHD-finger | 525 | 567 | 1.7E-7 | IPR019787 |
| Pfam | PF15612 | WSTF, HB1, Itc1p, MBD9 motif 1 | 424 | 455 | 1.2E-4 | IPR028942 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 519 | 571 | 3.77E-14 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1522 | 1575 | 2.14E-10 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 517 | 582 | 4.2E-14 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1512 | 1583 | 1.0E-12 | IPR013083 |
| SMART | SM00571 | testlast3 | 308 | 368 | 2.2E-12 | IPR018501 |
| SMART | SM00249 | PHD_3 | 1523 | 1571 | 1.2 | IPR001965 |
| SMART | SM00249 | PHD_3 | 1818 | 1865 | 1.6 | IPR001965 |
| SMART | SM00249 | PHD_3 | 524 | 567 | 2.2E-9 | IPR001965 |
| SMART | SM00249 | PHD_3 | 1311 | 1360 | 21.0 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 522 | 569 | 9.552299 | IPR019787 |
| ProSiteProfiles | PS50827 | DDT domain profile. | 308 | 368 | 15.345113 | IPR018501 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 525 | 566 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 282 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1055 | 1082 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1581 | 1602 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 152 | - | - |
| Coils | Coil | Coil | 447 | 467 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22760.1 | PHD finger family protein. | 0 |
| RefSeq | XP_048529021.1 | DDT domain-containing protein PTM-like [Triticum urartu] | 0 |
| F4JYC8 | DDT domain-containing protein PTM OS=Arabidopsis thaliana OX=3702 GN=PTM PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7UDY3 | Nucleosome-remodeling factor subunit BPTF OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg16345, jg8187, jg8191, jg8534 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_11602, gene_21235 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah005047, Ah011493 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g073390, BVRB_9g210880 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg11906, Sbi_jg17859, Sbi_jg46853, Sbi_jg62483 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg1060, Seu_jg21148 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007175, GOSA_00009474 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl59177, Sgl80325, Sgl82788, Sgl82794 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000019528, gene:ENSEOMG00000027405 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.4BG0002060, CQ.Regalona.r1.9AG0010610 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30051350, pistato.v30057270 |
| Apiaceae | Apium graveolens | 5 | Ag11G04354, Ag2G01027, Ag5G01215, Ag5G02730, Ag6G02295 |
| Arecaceae | Cocos nucifera | 2 | scaffold005364G000020, scaffold029272G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103696328, gene-LOC103705599, gene-LOC103723835 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G03128, Ftri12G12319, Ftri13G15123 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT5G12400.1, AT5G22760.1, AT5G35210.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10012427m.g.v1.0, Thhalv10012428m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp5g16400.v2.2, Sp6g22660.v2.2, Sp6g31240.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g049720.2N, BniB05g025410.2N, BniB05g041460.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq05G1663, Ceq05G1715 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G1656, Cgl05G1717 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g13560 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g16540, gene.Thate05g01030 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG09.171, evm.TU.LG09.774 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00006627, Pov_00012500, Pov_00024373, Pov_00026488 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G15682, Lb3G19930 |
| Poaceae | Echinochloa crus-galli | 14 | AH01.1528, AH01.1529, AH03.3973, AH04.196, AH04.274 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_5AG0381300, gene-QOZ80_7AG0580400 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0116410.1, HORVU.MOREX.r3.4HG0355590.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_003146, gene-QYE76_039040, gene-QYE76_065275 |
| Poaceae | Oryza coarctata | 4 | Oco13G014960, Oco14G015810, Oco21G001060, Oco22G001890 |
| Poaceae | Oryza sativa | 2 | LOC_Os07g46690.1, LOC_Os11g05130.1 |
| Poaceae | Paspalum vaginatum | 5 | gene-BS78_02G093300, gene-BS78_02G379700 ... |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0103659, Pt_Chr0103676, Pt_Chr0305094, Pt_Chr0305146 ... |
| Poaceae | Sporobolus alterniflorus | 11 | Chr04G022060, Chr04G022070, Chr04G022080, Chr06G023790 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel2E01G264700, Tel4E01G208000, Tel5E01G236500 ... |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC2AG015620, gene_TRIDC2BG018780 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS2A02G126900.1, TraesCS2B02G148800.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb092810_P002, Zm00001eb214600_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-167, nbis-gene-25663, nbis-gene-33183 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g24727, Zma_g5726, Zma_g7016 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG06.1060, evm.TU.LG11.463, evm.TU.LG18.1709 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g33260, gene.Posoc05g23110 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_13_RagTag.1011 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-30004, nbisL1-mrna-30674 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-3519, nbisL1-mrna-4825 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16375, nbisL1-mrna-22078 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.256, evm.TU.utg000015l.605 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015617, Maker00015887 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-4141, nbisL1-mrna-4508 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20784, nbisL1-mrna-22182 |
| Salicaceae | Populus euphratica | 5 | populus_peu01969, populus_peu08552, populus_peu35835 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132600516, gene-LOC132604445, gene-LOC132643627 |
| Solanaceae | Solanum chilense | 2 | SOLCI001772100, SOLCI002623400 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107004581, gene-LOC107004681, gene-LOC107023253 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_7401, gene_8603 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G1863, TC07G1486 |
| Zosteraceae | Zostera marina | 1 | Zosma04g20720.v3.1 |