Basic Information
Locus ID:
Tel5E01G219700
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 199785414 | 199789182 | + | Tel5E01G219700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.58 | 93,685.04 Da | 54.78 | 62.45 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 402 | 434 | 3.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 542 | 578 | 0.014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 687 | 712 | 0.092 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 500 | 536 | 9.5E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 397 | 718 | 2.17E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 375 | 450 | 3.6E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 493 | 731 | 2.3E-46 | IPR015943 |
| SMART | SM00320 | WD40_4 | 396 | 435 | 9.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 539 | 578 | 3.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 672 | 713 | 0.19 | IPR001680 |
| SMART | SM00320 | WD40_4 | 498 | 536 | 4.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 580 | 619 | 1.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 635 | 671 | 5.8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 505 | 536 | 10.996502 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 545 | 579 | 9.99469 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 505 | 545 | 13.917108 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 545 | 587 | 12.045688 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 403 | 436 | 13.85027 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 403 | 436 | 11.471045 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 422 | 436 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 565 | 579 | 3.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 523 | 537 | 3.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 422 | 436 | 3.5E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 814 | 831 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 457 | 482 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 160 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 212 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 793 | 807 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 783 | 831 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 387 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 328 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 387 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15470.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037440164.1 | WD repeat-containing protein 44-like [Triticum dicoccoides] | 0 |
| Q9R037 | WD repeat-containing protein 44 OS=Rattus norvegicus OX=10116 GN=Wdr44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6LIZ1 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology