Basic Information
Locus ID:
Tel5E01G184600
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 137421543 | 137425855 | - | Tel5E01G184600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 33,785.02 Da | 45.52 | 59.17 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 33 | 98 | 4.1E-12 | IPR008913 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 185 | 219 | 2.1E-6 | - |
| Pfam | PF14599 | Zinc-ribbon | 224 | 281 | 3.0E-25 | IPR039512 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 89 | 146 | 1.96E-19 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 191 | 226 | 1.68E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 146 | 221 | 1.0E-9 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 247 | 288 | 1.8E-18 | - |
| SMART | SM00184 | ring_2 | 153 | 219 | 3.1E-5 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 26 | 112 | 17.646273 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 88 | 152 | 33.595459 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 153 | 220 | 9.774726 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62970.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_048528764.1 | E3 ubiquitin-protein ligase MIEL1-like isoform X1 [Triticum urartu] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6LGC2 | RING finger and CHY zinc finger domain-containing protein 1 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology