Basic Information
Locus ID:
Tel5E01G176100
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Poly(A) polymerase central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 130800848 | 130803708 | - | Tel5E01G176100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 43,293.11 Da | 37.82 | 90.53 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 50 | 209 | 9.76515E-27 | - |
| Pfam | PF04928 | Poly(A) polymerase central domain | 214 | 338 | 2.8E-53 | IPR007012 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 10 | 212 | 1.8E-27 | IPR007012 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 83 | 132 | 2.8E-9 | IPR002934 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 341 | 380 | 3.1E-8 | IPR007010 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 339 | 380 | 1.08E-12 | IPR011068 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 214 | 338 | 8.11E-48 | - |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 10 | 208 | 1.78E-43 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 214 | 336 | 8.3E-55 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 42 | 203 | 8.0E-70 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 10 | 212 | 8.0E-70 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 340 | 380 | 3.5E-11 | - |
| PIRSF | PIRSF018425 | PolyA_polymerase | 1 | 214 | 1.3E-81 | IPR014492 |
| PIRSF | PIRSF018425 | PolyA_polymerase | 213 | 380 | 1.7E-81 | IPR014492 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17980.1 | poly(A) polymerase 1. Encodes a poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_044364738.1 | nuclear poly(A) polymerase 1-like [Triticum aestivum] | 0 |
| Q9LMT2 | Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=PAPS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453HC72 | Poly(A) polymerase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology