Basic Information
Locus ID:
Tel5E01G029300
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 19794148 | 19810764 | + | Tel5E01G029300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.12 | 37,646.08 Da | 61.71 | 69.22 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 203 | 244 | 3.34468E-23 | - |
| Pfam | PF14369 | zinc-ribbon | 17 | 47 | 3.0E-10 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 202 | 244 | 4.8E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 183 | 252 | 1.33E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 166 | 250 | 6.8E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 203 | 243 | 1.8E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 203 | 244 | 12.002429 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 283 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 270 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_040260236.1 | probable E3 ubiquitin-protein ligase RHC1A isoform X1 [Aegilops tauschii subsp. strangulata] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6H091 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology