HalophFGD

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Basic Information
Locus ID: Tel4E01G598200
Species & Taxonomic ID: Thinopyrum elongatum & 4588
Genome Assembly: GWHABKY00000000
Short Name: CCD8
Description: Retinal pigment epithelial membrane protein
Maps and Mapping Data
Chromosome Start End Strand ID
chr4 590609761 590611195 + Tel4E01G598200
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
10.23 42,969.28 Da 61.39 93.67 -0.29
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
MobiDBLite mobidb-lite consensus disorder prediction 63 78 - -
MobiDBLite mobidb-lite consensus disorder prediction 15 36 - -
MobiDBLite mobidb-lite consensus disorder prediction 1 84 - -
KEGG Pathway
KO Term:
K17913 (carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase [EC:1.13.11.69 1.13.11.70])
Pathway:
ko00906 (Carotenoid biosynthesis) map00906 (Carotenoid biosynthesis)
Reaction:
R10558 (9-cis-10'-Apo-beta-carotenal + 2 Oxygen <=> Carlactone + (2E,4E,6E)-7-Hydroxy-4-methylhepta-2,4,6-trienal)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_044377184.1 uncharacterized protein LOC123099108 [Triticum aestivum] 0
TrEMBL A0A3B6U6R1 FBD domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 17 AH03.2980, AH03.3016, AH03.3734, BH03.3179, BH03.3186 ...
BH03.4012, BH03.4013, BH03.4260, CH02.1632, CH03.3342, CH03.3348, CH03.3349, CH03.3358, CH03.3373, CH03.4281, CH07.236, CH07.241
Poaceae Eleusine coracana subsp. coracana 13 gene-QOZ80_1AG0040150, gene-QOZ80_5AG0362280 ...
gene-QOZ80_7AG0567200, gene-QOZ80_7AG0567380, gene-QOZ80_7AG0567490, gene-QOZ80_7AG0577600, gene-QOZ80_7BG0598680, gene-QOZ80_7BG0598840, gene-QOZ80_7BG0598930, gene-QOZ80_7BG0601540, gene-QOZ80_8AG0640840, gene-QOZ80_8AG0640850, gene-QOZ80_8BG0643680
Poaceae Hordeum vulgare 14 HORVU.MOREX.r3.1HG0084540.1, HORVU.MOREX.r3.2HG0195010.1 ...
HORVU.MOREX.r3.2HG0188030.1.CDS1, HORVU.MOREX.r3.4HG0395670.1, HORVU.MOREX.r3.4HG0415360.1, HORVU.MOREX.r3.4HG0418200.1, HORVU.MOREX.r3.6HG0632570.1, HORVU.MOREX.r3.7HG0731450.1, HORVU.MOREX.r3.7HG0737880.1, HORVU.MOREX.r3.7HG0745040.1.CDS1, HORVU.MOREX.r3.7HG0745200.1, HORVU.MOREX.r3.7HG0745250.1, HORVU.MOREX.r3.7HG0745320.1, HORVU.MOREX.r3.7HG0745500.1
Poaceae Lolium multiflorum 36 gene-QYE76_000424, gene-QYE76_001664, gene-QYE76_003032 ...
gene-QYE76_006384, gene-QYE76_006396, gene-QYE76_006472, gene-QYE76_006476, gene-QYE76_025646, gene-QYE76_026198, gene-QYE76_036283, gene-QYE76_036711, gene-QYE76_036712, gene-QYE76_036713, gene-QYE76_036716, gene-QYE76_036719, gene-QYE76_036720, gene-QYE76_041359, gene-QYE76_049657, gene-QYE76_059691, gene-QYE76_059693, gene-QYE76_060055, gene-QYE76_071578, gene-QYE76_071580, gene-QYE76_071595, gene-QYE76_071600, gene-QYE76_071606, gene-QYE76_071634, gene-QYE76_071635, gene-QYE76_071697, gene-QYE76_071698, gene-QYE76_071704, gene-QYE76_071731, gene-QYE76_071733, gene-QYE76_071734, gene-QYE76_071799, gene-QYE76_071861
Poaceae Oryza coarctata 1 Oco13G009530
Poaceae Oryza sativa 1 LOC_Os12g36000.1
Poaceae Paspalum vaginatum 4 gene-BS78_02G277100, gene-BS78_02G277800 ...
gene-BS78_02G277900, gene-BS78_06G208700
Poaceae Puccinellia tenuiflora 18 Pt_Chr0100991, Pt_Chr0100992, Pt_Chr0106729, Pt_Chr0106914 ...
Pt_Chr0106915, Pt_Chr0300155, Pt_Chr0303262, Pt_Chr0303312, Pt_Chr0306558, Pt_Chr0401318, Pt_Chr0401613, Pt_Chr0401615, Pt_Chr0401618, Pt_Chr0401619, Pt_Chr0401620, Pt_Chr0401621, Pt_Chr0404054, Pt_Chr0701494
Poaceae Sporobolus alterniflorus 4 Chr0G002260, Chr24G005000, Chr28G006610, Chr28G006620
Poaceae Thinopyrum elongatum 23 Tel2E01G573100, Tel2E01G761200, Tel2E01G785900 ...
Tel3E01G652100, Tel4E01G552600, Tel4E01G597600, Tel4E01G598200, Tel5E01G045400, Tel5E01G104300, Tel6E01G160800, Tel7E01G598300, Tel7E01G806500, Tel7E01G808300, Tel7E01G808800, Tel7E01G810100, Tel7E01G851100, Tel7E01G899500, Tel7E01G901500, Tel7E01G901700, Tel7E01G901900, Tel7E01G902000, Tel7E01G902100, Tel7E01G902900
Poaceae Triticum dicoccoides 18 gene_TRIDC2AG047970, gene_TRIDC2BG050460 ...
gene_TRIDC2BG071150, gene_TRIDC4BG060960, gene_TRIDC4BG060990, gene_TRIDC5AG075660, gene_TRIDC5AG075680, gene_TRIDC5BG008230, gene_TRIDC5BG078890, gene_TRIDC7AG072750, gene_TRIDC7AG072880, gene_TRIDC7AG072920, gene_TRIDC7BG041510, gene_TRIDC7BG060240, gene_TRIDC7BG060300, gene_TRIDC7BG068870, gene_TRIDC7BG068910, gene_TRIDC7BG069090
Poaceae Triticum aestivum 52 TraesCS2A02G333300.1, TraesCS2A02G465500.1 ...
TraesCS2B02G469900.1, TraesCS2B02G487000.1, TraesCS2B02G487100.1, TraesCS2D02G327500.1, TraesCS2D02G448100.1, TraesCS2D02G465900.2, TraesCS3A02G410300.1, TraesCS3A02G410400.1, TraesCS3B02G443700.1, TraesCS3D02G405000.1, TraesCS3D02G405100.1, TraesCS4B02G364600.1, TraesCS4B02G365200.1, TraesCS4B02G365300.1, TraesCS4B02G393800.1, TraesCS5A02G533800.3, TraesCS5B02G049300.1, TraesCS5D02G055200.1, TraesCS6A02G066700.1, TraesCS7A02G374600.1, TraesCS7A02G497700.1, TraesCS7A02G518600.1, TraesCS7A02G518700.1, TraesCS7A02G519100.1, TraesCS7A02G519300.1, TraesCS7A02G519400.1, TraesCS7A02G519900.1, TraesCS7B02G225700.1, TraesCS7B02G252800.1, TraesCS7B02G379200.1, TraesCS7B02G433600.1.cds1, TraesCS7B02G434600.1, TraesCS7B02G434900.1, TraesCS7B02G435200.1, TraesCS7B02G435400.1, TraesCS7B02G436000.1, TraesCS7B02G436300.1, TraesCS7D02G141800.1, TraesCS7D02G321600.1, TraesCS7D02G464500.1, TraesCS7D02G465100.1, TraesCS7D02G485000.1, TraesCS7D02G508300.1, TraesCS7D02G508500.1, TraesCS7D02G508600.1, TraesCS7D02G509000.1, TraesCS7D02G509600.1, TraesCSU02G117400.1, TraesCSU02G138500.1, TraesCSU02G139200.1
Poaceae Zea mays 1 Zm00001eb105050_P001
Poaceae Zoysia japonica 3 nbis-gene-1023, nbis-gene-32928, nbis-gene-32976
Poaceae Zoysia macrostachya 2 Zma_g5574, Zma_g6436
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.