Basic Information
Locus ID:
Tel4E01G573100
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Protein of unknown function (DUF674)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 581031154 | 581034322 | + | Tel4E01G573100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 55,725.72 Da | 38.61 | 91.65 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05056 | Protein of unknown function (DUF674) | 4 | 93 | 2.0E-19 | IPR007750 |
| Pfam | PF00240 | Ubiquitin family | 423 | 492 | 9.7E-13 | IPR000626 |
| Pfam | PF05056 | Protein of unknown function (DUF674) | 106 | 320 | 6.9E-36 | IPR007750 |
| Pfam | PF05056 | Protein of unknown function (DUF674) | 355 | 418 | 8.0E-9 | IPR007750 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 410 | 491 | 1.44E-15 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 418 | 492 | 1.6E-17 | - |
| SMART | SM00213 | ubq_7 | 421 | 493 | 3.2E-14 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 421 | 488 | 13.837477 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 431 | 451 | 9.3E-5 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 474 | 495 | 9.3E-5 | IPR019956 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09140.2 | Protein of unknown function (DUF674). | 0 |
| RefSeq | XP_044371780.1 | uncharacterized protein LOC123093793 [Triticum aestivum] | 0 |
| Q39256 | Polyubiquitin 8 OS=Arabidopsis thaliana OX=3702 GN=UBQ8 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B6IVM8 | Ubiquitin-like domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | AH01.5106 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3BG0296450 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0075250.1, HORVU.MOREX.r3.4HG0413000.2 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_062937, gene-QYE76_071335, gene-QYE76_071336 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G502800 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0100642, Pt_Chr0100660, Pt_Chr0100663 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr01G038660 |
| Poaceae | Thinopyrum elongatum | 5 | Tel1E01G446600, Tel4E01G571500, Tel4E01G571600 ... |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4BG058660, gene_TRIDC4BG058770 ... |
| Poaceae | Triticum aestivum | 19 | TraesCS1A02G273800.1, TraesCS1B02G283500.1 ... |