Basic Information
Locus ID:
Tel4E01G515900
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 548810569 | 548811891 | - | Tel4E01G515900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.89 | 46,433.99 Da | 35.40 | 76.07 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 305 | 339 | 0.022 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 141 | 174 | 5.1E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 139 | 433 | 2.29E-38 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 264 | 437 | 1.5E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 129 | 263 | 2.7E-17 | IPR015943 |
| SMART | SM00320 | WD40_4 | 135 | 174 | 2.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 217 | 255 | 19.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 351 | 393 | 27.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 303 | 340 | 0.004 | IPR001680 |
| SMART | SM00320 | WD40_4 | 262 | 300 | 0.34 | IPR001680 |
| SMART | SM00320 | WD40_4 | 396 | 433 | 370.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 287 | 309 | 9.639578 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 142 | 174 | 10.891048 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 142 | 183 | 14.084198 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 28 | 54 | 11.553852 | IPR000571 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 287 | 301 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 161 | 175 | 9.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 327 | 341 | 9.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 287 | 301 | 9.1E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 122 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51980.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_048572610.1 | zinc finger CCCH domain-containing protein 17-like [Triticum urartu] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6I2Z3 | C3H1-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology