Basic Information
Locus ID:
Tel4E01G403300
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
C-5 cytosine-specific DNA methylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 466540075 | 466550745 | + | Tel4E01G403300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 169,497.16 Da | 51.79 | 70.58 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 1186 | 1484 | 1.48507E-93 | - |
| CDD | cd18635 | CD_CMT3_like | 488 | 543 | 8.53996E-30 | - |
| Pfam | PF01426 | BAH domain | 224 | 344 | 6.5E-10 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 575 | 920 | 1.0E-32 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 488 | 544 | 4.1E-12 | IPR023780 |
| Pfam | PF00069 | Protein kinase domain | 1321 | 1417 | 5.6E-23 | IPR000719 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1184 | 1296 | 6.7E-18 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1158 | 1482 | 7.69E-74 | IPR011009 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 382 | 920 | 2.47E-75 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 478 | 544 | 2.75E-13 | IPR016197 |
| Gene3D | G3DSA:2.30.30.490 | - | 161 | 330 | 9.4E-46 | IPR043151 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1258 | 1495 | 1.1E-59 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 331 | 732 | 2.8E-159 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 733 | 886 | 4.0E-50 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1157 | 1257 | 3.0E-33 | - |
| SMART | SM00220 | serkin_6 | 1180 | 1470 | 1.1E-27 | IPR000719 |
| SMART | SM00439 | BAH_4 | 221 | 345 | 1.3E-18 | IPR001025 |
| SMART | SM00298 | chromo_7 | 487 | 546 | 1.3E-7 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 221 | 345 | 17.027946 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 382 | 927 | 44.14817 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 488 | 544 | 12.865201 | IPR000953 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1180 | 1470 | 36.442413 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1329 | 1341 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1186 | 1209 | - | IPR017441 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 581 | 593 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 670 | 683 | 4.6E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 383 | 399 | 4.6E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 624 | 638 | 4.6E-10 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 167 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 955 | 971 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1526 | 1547 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 972 | 1011 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1012 | 1026 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 955 | 1052 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1526 | 1540 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 150 | 167 | - | - |
| Coils | Coil | Coil | 111 | 136 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_044360249.1 | DNA (cytosine-5)-methyltransferase CMT1-like [Triticum aestivum] | 0 |
| A0A0P0VUY4 | DNA (cytosine-5)-methyltransferase CMT1 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0E0CXE8 | DNA (cytosine-5-)-methyltransferase OS=Oryza meridionalis OX=40149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology