Basic Information
Locus ID:
Tel4E01G387400
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Short Name:
NTMC2T4.2
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 450274863 | 450278198 | - | Tel4E01G387400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 56,872.92 Da | 30.27 | 101.73 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 272 | 361 | 2.11028E-27 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 75 | 254 | 2.4E-17 | IPR039010 |
| Pfam | PF00168 | C2 domain | 270 | 366 | 3.5E-21 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 268 | 400 | 9.51E-29 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 254 | 427 | 1.4E-29 | IPR035892 |
| SMART | SM00239 | C2_3c | 271 | 369 | 7.2E-20 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 253 | 372 | 21.159464 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 73 | 255 | 23.826645 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 334 | 342 | 5.8E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 312 | 325 | 5.8E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 287 | 299 | 5.8E-5 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 442 | - | - |
| Coils | Coil | Coil | 405 | 425 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_037428032.1 | synaptotagmin-5-like [Triticum dicoccoides] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | A0A453II40 | Synaptotagmin-4 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology