Basic Information
Locus ID:
Tel4E01G384600
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 447478040 | 447486156 | + | Tel4E01G384600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 124,688.04 Da | 41.49 | 80.29 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 914 | 947 | 0.0037 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 447 | 480 | 9.3E-4 | IPR001680 |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 897 | 1104 | 5.23E-14 | IPR011048 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 489 | 952 | 5.1E-40 | IPR011047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 339 | 524 | 8.97E-25 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 736 | 958 | 4.3E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 561 | 677 | 4.2E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 322 | 560 | 3.4E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 966 | 1123 | 1.0E-5 | IPR015943 |
| SMART | SM00667 | Lish | 4 | 36 | 5.2E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 999 | 1041 | 4.7 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.7E-12 | IPR006595 |
| SMART | SM00320 | WD40_4 | 820 | 862 | 41.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 484 | 525 | 0.07 | IPR001680 |
| SMART | SM00320 | WD40_4 | 334 | 373 | 32.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 394 | 434 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 865 | 905 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 528 | 571 | 29.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 617 | 658 | 340.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 908 | 947 | 2.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 440 | 481 | 1.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 574 | 614 | 5.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 915 | 956 | 12.480124 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 447 | 490 | 9.97376 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 915 | 947 | 10.205597 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 12.886961 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.212169 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 468 | 482 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1100 | 1130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1107 | 1130 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.1 | TOPLESS-related 1. | 0 |
| RefSeq | XP_037425539.1 | protein TPR3-like isoform X2 [Triticum dicoccoides] | 0 |
| Q10NY2 | Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6IUJ3 | TOPLESS OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology