Basic Information
Locus ID:
Tel4E01G364300
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 425377654 | 425381348 | - | Tel4E01G364300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 61,524.10 Da | 36.68 | 97.08 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 154 | 196 | 3.33408E-27 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 276 | 314 | 2.9E-8 | IPR000225 |
| Pfam | PF04564 | U-box domain | 150 | 220 | 5.6E-20 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 358 | 396 | 2.2E-7 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 143 | 226 | 3.28E-30 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 249 | 521 | 1.65E-46 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 147 | 223 | 6.4E-32 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 434 | 557 | 1.1E-9 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 236 | 433 | 7.1E-38 | IPR011989 |
| SMART | SM00185 | arm_5 | 234 | 273 | 480.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 398 | 438 | 14.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 439 | 479 | 170.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 153 | 216 | 1.0E-32 | IPR003613 |
| SMART | SM00185 | arm_5 | 275 | 315 | 8.3E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 316 | 356 | 14.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 483 | 523 | 300.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 357 | 397 | 0.017 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 149 | 223 | 44.566402 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 286 | 328 | 11.3924 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 409 | 451 | 8.5574 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 529 | 560 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 529 | 569 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_044982010.1 | protein spotted leaf 11-like [Hordeum vulgare subsp. vulgare] | 0 |
| A2ZLU6 | Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8I6XGI5 | RING-type E3 ubiquitin transferase OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology