Basic Information
Locus ID:
Tel4E01G247100
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
E3 ubiquitin ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 210372120 | 210372657 | - | Tel4E01G247100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.86 | 7,708.04 Da | 46.79 | 73.62 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 21 | 57 | 2.08E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 17 | 63 | 2.2E-7 | IPR013083 |
| SMART | SM00184 | ring_2 | 25 | 60 | 0.0037 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1 | 24 | 10.817473 | IPR017921 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_034594607.1 | zinc finger protein BRUTUS-like isoform X2 [Setaria viridis] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A453SZI4 | CTCHY-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg9136 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5BG0412270 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G247100 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7AG059190 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G421700.1, TraesCS6D02G075000.2 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132625745 |