Basic Information
Locus ID:
Tel4E01G241100
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 194177292 | 194182403 | + | Tel4E01G241100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.70 | 48,233.58 Da | 45.37 | 68.58 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 164 | 238 | 9.48465E-49 | - |
| CDD | cd12352 | RRM1_TIA1_like | 80 | 150 | 1.74327E-34 | - |
| CDD | cd12354 | RRM3_TIA1_like | 284 | 357 | 4.05893E-32 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 286 | 351 | 1.6E-11 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 80 | 146 | 8.5E-14 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 165 | 235 | 1.3E-19 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 270 | 361 | 3.8E-21 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 77 | 241 | 2.04E-45 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 262 | 361 | 5.1E-22 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 161 | 3.2E-26 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 162 | 259 | 4.1E-26 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 285 | 353 | 1.4E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 79 | 148 | 4.3E-17 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 164 | 237 | 5.7E-24 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 164 | 237 | 0.14 | IPR003954 |
| SMART | SM00361 | rrm2_1 | 285 | 353 | 2.9 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 284 | 357 | 16.773018 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 163 | 241 | 18.171562 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 78 | 152 | 15.033368 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_048547544.1 | oligouridylate-binding protein 1B-like [Triticum urartu] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6ISH4 | Oligouridylate-binding protein 1B OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology