Basic Information
Locus ID:
Tel4E01G215000
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 143922751 | 143940158 | + | Tel4E01G215000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.80 | 79,118.51 Da | 43.55 | 86.23 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 281 | 417 | 6.21227E-69 | - |
| CDD | cd18015 | DEXHc_RecQ1 | 72 | 280 | 2.45514E-128 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 305 | 407 | 7.5E-15 | IPR001650 |
| Pfam | PF00570 | HRDC domain | 609 | 669 | 1.6E-5 | IPR002121 |
| Pfam | PF16124 | RecQ zinc-binding | 420 | 475 | 2.5E-10 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 93 | 260 | 4.3E-18 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 129 | 424 | 4.54E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 47 | 280 | 5.7E-89 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 602 | 673 | 4.8E-11 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 281 | 478 | 4.7E-63 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 481 | 586 | 1.2E-24 | IPR036388 |
| SMART | SM00490 | helicmild6 | 327 | 408 | 5.5E-26 | IPR001650 |
| SMART | SM00487 | ultradead3 | 86 | 289 | 2.6E-28 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 83 | 506 | 7.1E-158 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 98 | 273 | 23.530289 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 601 | 680 | 11.155956 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 298 | 450 | 19.222878 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 671 | 703 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 678 | 703 | - | - |
| Coils | Coil | Coil | 597 | 617 | - | - |
| Coils | Coil | Coil | 4 | 38 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_044374410.1 | ATP-dependent DNA helicase Q-like 2 isoform X1 [Triticum aestivum] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6JIY4 | ATP-dependent DNA helicase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology