Basic Information
Locus ID:
Tel4E01G204000
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Polysaccharide lyase family 4, domain III
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 135729515 | 135733506 | + | Tel4E01G204000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 77,005.41 Da | 35.60 | 78.38 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10320 | RGL4_N | 45 | 341 | 1.0071E-61 | - |
| CDD | cd10317 | RGL4_C | 492 | 685 | 2.81912E-52 | - |
| CDD | cd10316 | RGL4_M | 380 | 480 | 7.13993E-33 | IPR029413 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 403 | 475 | 5.1E-22 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 29 | 137 | 2.7E-29 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 490 | 684 | 7.4E-50 | IPR029411 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 154 | 247 | 2.3E-33 | IPR010325 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 245 | 342 | 1.66E-5 | IPR011013 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 487 | 685 | 1.96E-36 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 377 | 478 | 7.26E-7 | IPR013784 |
| Gene3D | G3DSA:2.60.40.1120 | - | 377 | 477 | 3.6E-8 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 487 | 685 | 2.5E-13 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 25 | 343 | 1.8E-11 | IPR014718 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09880.4 | - | 0 |
| RefSeq | XP_037424330.1 | probable rhamnogalacturonate lyase C [Triticum dicoccoides] | 0 |
| TrEMBL | A0A3B6HX08 | rhamnogalacturonan endolyase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology