Basic Information
Locus ID:
Tel4E01G125700
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 72391058 | 72393504 | + | Tel4E01G125700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.92 | 28,295.50 Da | 69.44 | 72.78 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 200 | 244 | 8.9E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 190 | 250 | 5.3E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 180 | 249 | 1.5E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 201 | 243 | 6.9E-6 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 197 | 252 | 0.0074 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 201 | 244 | 12.120453 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 90 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_044368464.1 | probable E3 ubiquitin-protein ligase RHY1A [Triticum aestivum] | 0 |
| P36096 | Transmembrane E3 ubiquitin-protein ligase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TUL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6IL06 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0342490.1 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G125700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG037530, gene_TRIDC4BG012050 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G237400.1, TraesCS4B02G077700.1 ... |