Basic Information
Locus ID:
Tel4E01G113900
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
In Between Ring fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 62882096 | 62889239 | - | Tel4E01G113900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 61,239.70 Da | 56.92 | 70.30 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 207 | 271 | 2.2E-11 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 284 | 342 | 1.13E-14 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 132 | 217 | 2.56E-15 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 208 | 278 | 3.21E-10 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 267 | 512 | 3.1E-50 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 131 | 217 | 8.5E-15 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 207 | 271 | 2.3E-15 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 279 | 336 | 0.33 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 132 | 340 | 38.977356 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 136 | 186 | 9.877997 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34370.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_044373611.1 | probable E3 ubiquitin-protein ligase ARI1 [Triticum aestivum] | 0 |
| Q949V6 | Probable E3 ubiquitin-protein ligase ARI1 OS=Arabidopsis thaliana OX=3702 GN=ARI1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6JF51 | RBR-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0341130.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_062978 |
| Poaceae | Oryza coarctata | 1 | Oco06G019190 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0101864, Pt_Chr0104424, Pt_Chr0704377, Pt_Ctg00135 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G052000, Tel4E01G113900 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4AG038460, gene_TRIDC4AG038470 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G244200.1, TraesCS4B02G070800.1 ... |