Basic Information
Locus ID:
Tel4E01G113100
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 62625965 | 62631519 | - | Tel4E01G113100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 56,199.22 Da | 53.16 | 73.95 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 120 | 172 | 3.07182E-25 | - |
| Pfam | PF00412 | LIM domain | 120 | 175 | 9.2E-11 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 269 | 493 | 6.6E-97 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 146 | 201 | 6.39E-10 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 114 | 145 | 6.75E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 111 | 179 | 2.9E-16 | - |
| SMART | SM00726 | uim | 38 | 57 | 0.034 | IPR003903 |
| SMART | SM00132 | lim_4 | 119 | 171 | 2.8E-12 | IPR001781 |
| SMART | SM00726 | uim | 69 | 88 | 0.63 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 38 | 57 | 9.921792 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 69 | 84 | 9.769357 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 118 | 178 | 12.3454 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 120 | 154 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 68 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_020154460.2 | protein DA1-related 1 [Aegilops tauschii subsp. strangulata] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A3B6JGN9 | LIM zinc-binding domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology