Basic Information
Locus ID:
Tel4E01G097700
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
USP8 dimerisation domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 50843433 | 50849496 | + | Tel4E01G097700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 58,562.29 Da | 55.83 | 79.66 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 347 | 522 | 9.59291E-110 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 344 | 450 | 6.5E-17 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 14 | 109 | 1.1E-11 | IPR015063 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 347 | 478 | 5.23E-18 | - |
| SUPERFAMILY | SSF140856 | USP8 N-terminal domain-like | 26 | 127 | 3.01E-5 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 334 | 524 | 1.2E-72 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 4 | 139 | 5.3E-32 | - |
| SMART | SM00232 | pad1_6 | 346 | 475 | 1.7E-12 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 346 | 478 | 27.903883 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 176 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 183 | - | - |
| Coils | Coil | Coil | 102 | 122 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_020147587.1 | AMSH-like ubiquitin thioesterase 3 [Aegilops tauschii subsp. strangulata] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A453H9Q6 | MPN domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology