Basic Information
Locus ID:
Tel4E01G083000
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 39871040 | 39874707 | + | Tel4E01G083000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.19 | 59,701.88 Da | 58.16 | 68.77 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 308 | 331 | 1.5E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 264 | 289 | 1.2E-7 | IPR001876 |
| SUPERFAMILY | SSF48695 | Multiheme cytochromes | 267 | 351 | 3.01E-5 | IPR036280 |
| Gene3D | G3DSA:4.10.1060.10 | - | 255 | 292 | 5.0E-13 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 337 | 371 | 1.8E-8 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 300 | 336 | 3.9E-12 | - |
| SMART | SM00547 | zf_4 | 310 | 334 | 1.7E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 343 | 367 | 0.029 | IPR001876 |
| SMART | SM00547 | zf_4 | 266 | 290 | 2.0E-7 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 341 | 370 | 9.314576 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 308 | 337 | 9.359745 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 264 | 293 | 9.913063 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 312 | 331 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 268 | 287 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 345 | 364 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 435 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 407 | 437 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 463 | 528 | - | - |
| Coils | Coil | Coil | 221 | 241 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70650.1 | Ran BP2/NZF zinc finger-like superfamily protein. | 0 |
| RefSeq | XP_044367400.1 | uncharacterized protein LOC123089929 [Triticum aestivum] | 0 |
| TrEMBL | A0A3B6IK24 | Zinc finger protein VAR3, chloroplastic OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology