Basic Information
Locus ID:
Tel4E01G080000
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 37495649 | 37500777 | + | Tel4E01G080000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.90 | 63,918.25 Da | 58.37 | 60.60 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 387 | 412 | 6.5E-4 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 313 | 337 | 2.4E-4 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 354 | 380 | 4.8E-7 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 381 | 415 | 1.46E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 310 | 340 | 2.67E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 348 | 381 | 2.38E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 344 | 381 | 2.3E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 305 | 343 | 7.0E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 382 | 415 | 6.1E-10 | - |
| SMART | SM00547 | zf_4 | 387 | 411 | 2.0E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 354 | 378 | 9.3E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 315 | 339 | 7.8E-5 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 385 | 414 | 9.754972 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 313 | 342 | 9.506543 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 352 | 381 | 9.879186 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 389 | 408 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 356 | 375 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 317 | 336 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 299 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 435 | 493 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 435 | 582 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 308 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 525 | 565 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_020194924.1 | zinc finger protein VAR3, chloroplastic [Aegilops tauschii subsp. strangulata] | 0 |
| TrEMBL | A0A3B6JCS9 | Zinc finger protein VAR3, chloroplastic OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology