halophFGD

Basic Information

Locus ID: Tel4E01G067300

Species & Taxonomic ID: Thinopyrum elongatum & 4588

Genome Assembly: GWHABKY00000000

Description: proteasome-activating ATPase activity

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	29775187	29776248	-	Tel4E01G067300

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.89	39,984.49 Da	43.92	84.53	-0.16

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	7	37	4.3E-4	IPR001810
SUPERFAMILY	SSF81383	F-box domain	5	45	2.62E-5	IPR036047
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	106	298	7.8E-18	IPR017451

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K03061 (26S proteasome regulatory subunit T1)

Pathway:

ko03050 (Proteasome) map03050 (Proteasome)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G53790.1	F-box and associated interaction domains-containing protein.
RefSeq	XP_051228914.1	F-box protein At3g07870-like [Lolium perenne]
Swiss-Prot	Q0WQM8	F-box protein At1g53790 OS=Arabidopsis thaliana OX=3702 GN=At1g53790 PE=2 SV=1
TrEMBL	A0A453H4E2	F-box domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Asparagaceae	Asparagus officinalis	2	AsparagusV1_04.129.V1.1, AsparagusV1_04.132.V1.1
Poaceae	Echinochloa crus-galli	12	AH01.2284, AH01.2287, AH02.3093, BH01.2576, BH01.2577 ... BH01.2600, BH01.2606, BH06.2373, BH06.2374, BH08.484, CH01.2781, CH01.2785
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.2HG0112950.1.CDS1 ... HORVU.MOREX.r3.5HG0509830.1.CDS1, HORVU.MOREX.r3.5HG0509860.1.CDS1, HORVU.MOREX.r3.6HG0540080.1.CDS1, HORVU.MOREX.r3.6HG0631840.1.CDS1
Poaceae	Lolium multiflorum	23	gene-QYE76_000501, gene-QYE76_002124, gene-QYE76_005967 ... gene-QYE76_014992, gene-QYE76_018899, gene-QYE76_023242, gene-QYE76_023243, gene-QYE76_025428, gene-QYE76_025429, gene-QYE76_035401, gene-QYE76_047095, gene-QYE76_056057, gene-QYE76_058287, gene-QYE76_061402, gene-QYE76_063367, gene-QYE76_063958, gene-QYE76_065546, gene-QYE76_067195, gene-QYE76_068002, gene-QYE76_068005, gene-QYE76_071518, gene-QYE76_071649, gene-QYE76_071650
Poaceae	Oryza coarctata	2	Oco09G017100, Oco09G017160
Poaceae	Oryza sativa	1	LOC_Os05g49450.1
Poaceae	Paspalum vaginatum	1	gene-BS78_01G236300
Poaceae	Puccinellia tenuiflora	14	Pt_Chr0100309, Pt_Chr0100311, Pt_Chr0100312, Pt_Chr0100314 ... Pt_Chr0100315, Pt_Chr0100317, Pt_Chr0100318, Pt_Chr0100321, Pt_Chr0100542, Pt_Chr0102698, Pt_Chr0200532, Pt_Chr0504632, Pt_Chr0600920, Pt_Chr0700610
Poaceae	Thinopyrum elongatum	6	Tel2E01G288800, Tel3E01G766900, Tel4E01G067300 ... Tel4E01G067500, Tel4E01G600200, Tel5E01G590100
Poaceae	Triticum aestivum	16	TraesCS2A02G142000.1, TraesCS2A02G551700.1.cds1 ... TraesCS2A02G567200.1.cds1, TraesCS2B02G167200.1.cds1, TraesCS2D02G127900.1.cds1, TraesCS3B02G520900.1, TraesCS3D02G472500.1.cds1, TraesCS4B02G034200.1.cds1, TraesCS5B02G387400.1.cds1, TraesCS5D02G379400.1.cds1, TraesCS6B02G000800.1.cds1, TraesCS6B02G009900.1.cds1, TraesCS6B02G042700.1.cds1, TraesCS6B02G042800.1.cds1, TraesCS6D02G006100.1.cds1, TraesCS6D02G034300.1.cds1