Basic Information
Locus ID:
Tel4E01G036800
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Zinc knuckle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 15174705 | 15179066 | - | Tel4E01G036800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.17 | 80,035.01 Da | 61.34 | 53.94 | -0.88 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16620 | vRING-HC-C4C4_RBBP6 | 262 | 303 | 1.49077E-13 | - |
| Pfam | PF08783 | DWNN domain | 5 | 81 | 6.0E-19 | IPR014891 |
| Pfam | PF13696 | Zinc knuckle | 172 | 192 | 1.0E-8 | IPR025829 |
| SUPERFAMILY | SSF57850 | RING/U-box | 257 | 328 | 5.1E-11 | - |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 170 | 218 | 1.15E-7 | IPR036875 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 85 | 3.0E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 245 | 337 | 1.5E-10 | IPR013083 |
| Gene3D | G3DSA:4.10.60.10 | - | 169 | 195 | 1.5E-5 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 196 | 235 | 1.6E-10 | - |
| SMART | SM00343 | c2hcfinal6 | 176 | 192 | 0.051 | IPR001878 |
| SMART | SM01180 | DWNN_2 | 4 | 82 | 6.3E-30 | IPR014891 |
| SMART | SM00343 | c2hcfinal6 | 202 | 218 | 0.042 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 177 | 192 | 8.729682 | IPR001878 |
| ProSiteProfiles | PS51282 | DWNN domain profile. | 4 | 82 | 15.105435 | IPR014891 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 203 | 217 | 8.746164 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 361 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 598 | 731 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 465 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 170 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 551 | 731 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47430.4 | - | 0 |
| RefSeq | XP_044365276.1 | E3 ubiquitin ligase PQT3-like isoform X1 [Triticum aestivum] | 0 |
| B9DFV2 | E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6HXR3 | E3 ubiquitin-protein ligase RBBP6 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology