Basic Information
Locus ID:
Tel3E01G892000
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 663570406 | 663573512 | - | Tel3E01G892000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.49 | 51,881.64 Da | 48.34 | 70.75 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 199 | 458 | 7.35619E-42 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 293 | 328 | 1.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 333 | 373 | 0.0019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 422 | 458 | 1.1E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 162 | 459 | 4.58E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 124 | 460 | 5.8E-121 | IPR015943 |
| SMART | SM00320 | WD40_4 | 161 | 202 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 376 | 416 | 270.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 331 | 373 | 3.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 289 | 328 | 1.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 248 | 285 | 5.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 205 | 245 | 0.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 419 | 458 | 1.3E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 426 | 459 | 13.917108 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 296 | 337 | 14.084198 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 426 | 459 | 11.523771 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 296 | 328 | 11.075592 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 445 | 459 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 63 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13840.1 | FIZZY-related 3. | 0 |
| RefSeq | XP_020198802.1 | protein FIZZY-RELATED 3 [Aegilops tauschii subsp. strangulata] | 0 |
| A0A396ISC0 | B-type cell cycle switch protein ccs52B OS=Medicago truncatula OX=3880 GN=CCS52B PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6H456 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology