Basic Information
Locus ID:
Tel3E01G890800
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 662687037 | 662688230 | + | Tel3E01G890800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 42,071.38 Da | 71.99 | 57.91 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 199 | 240 | 3.68017E-24 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 278 | 384 | 6.7E-40 | IPR010543 |
| Pfam | PF14369 | zinc-ribbon | 21 | 52 | 4.6E-11 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 198 | 240 | 3.0E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 179 | 247 | 7.49E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 166 | 246 | 1.5E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 199 | 239 | 9.8E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 199 | 240 | 12.149959 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 88 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_037408697.1 | probable E3 ubiquitin-protein ligase RHC2A [Triticum dicoccoides] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453GWD2 | RING-type E3 ubiquitin transferase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology