Basic Information
Locus ID:
Tel3E01G890600
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
RNA binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 662589217 | 662590963 | - | Tel3E01G890600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.18 | 47,789.38 Da | 46.87 | 87.71 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 313 | 384 | 1.6E-10 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 304 | 398 | 7.93E-17 | IPR035979 |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 39 | 1.03E-5 | IPR036047 |
| Gene3D | G3DSA:3.30.70.330 | - | 290 | 403 | 1.3E-15 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 312 | 386 | 1.7E-13 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 311 | 390 | 10.326077 | IPR000504 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_044445390.1 | uncharacterized protein LOC123172492 [Triticum aestivum] | 0 |
| Q08937 | 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6U4L3 | RRM domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology