Basic Information
Locus ID:
Tel3E01G885000
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
MSP (Major sperm protein) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 659578329 | 659583900 | - | Tel3E01G885000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 85,908.22 Da | 34.88 | 91.54 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14798 | RX-CC_like | 467 | 595 | 7.83543E-26 | IPR038005 |
| Pfam | PF00635 | MSP (Major sperm protein) domain | 266 | 361 | 1.3E-14 | IPR000535 |
| Pfam | PF00931 | NB-ARC domain | 657 | 739 | 1.9E-10 | IPR002182 |
| Pfam | PF00069 | Protein kinase domain | 32 | 244 | 1.5E-46 | IPR000719 |
| Pfam | PF18052 | Rx N-terminal domain | 470 | 555 | 1.8E-20 | IPR041118 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 21 | 253 | 1.89E-63 | IPR011009 |
| SUPERFAMILY | SSF49354 | PapD-like | 245 | 382 | 3.66E-19 | IPR008962 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 615 | 737 | 7.29E-18 | IPR027417 |
| Gene3D | G3DSA:1.20.5.4130 | - | 469 | 579 | 1.6E-26 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 12 | 104 | 1.4E-21 | - |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 256 | 381 | 2.3E-23 | IPR013783 |
| Gene3D | G3DSA:3.40.50.300 | - | 620 | 743 | 1.1E-15 | IPR027417 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 130 | 255 | 6.1E-22 | - |
| SMART | SM00220 | serkin_6 | 32 | 361 | 1.1E-31 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 32 | 372 | 34.237507 | IPR000719 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 259 | 377 | 16.111177 | IPR000535 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 168 | 180 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 38 | 59 | - | IPR017441 |
| Coils | Coil | Coil | 496 | 516 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70530.2 | - | 0 |
| RefSeq | XP_037416239.1 | disease resistance protein RGA5-like isoform X6 [Triticum dicoccoides] | 0 |
| Q9T0J1 | Cysteine-rich receptor-like protein kinase 26 OS=Arabidopsis thaliana OX=3702 GN=CRK26 PE=2 SV=1 | 0 | |
| TrEMBL | A0A080YUG9 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 GN=TRAES_3BF278900040CFD_c1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_000240 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G117800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0601224 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G885000 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3BG085690, gene_TRIDC3BG085710 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3B02G593500.1, TraesCS3B02G611100.1 ... |