Basic Information
Locus ID:
Tel3E01G878300
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 656570806 | 656571624 | + | Tel3E01G878300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.06 | 29,856.74 Da | 64.56 | 77.54 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 186 | 230 | 4.7E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 172 | 236 | 1.12E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 172 | 238 | 3.0E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 187 | 229 | 1.0E-7 | IPR001841 |
| SMART | SM00744 | ringv_2 | 186 | 230 | 0.001 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 187 | 230 | 12.858103 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 262 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 272 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G48030.2 | - | 0 |
| RefSeq | XP_051177277.1 | uncharacterized protein LOC127291975 [Lolium perenne] | 0 |
| Q7X843 | RING-H2 finger protein ATL48 OS=Arabidopsis thaliana OX=3702 GN=ATL48 PE=1 SV=2 | 0 | |
| TrEMBL | A0A453GVN0 | RING-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH02.1925, CH02.2138 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0535530, gene-QOZ80_6AG0535550 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0344770.1.CDS1 |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_000907, gene-QYE76_009970, gene-QYE76_042560 ... |
| Poaceae | Oryza coarctata | 1 | Oco01G015310 |
| Poaceae | Oryza sativa | 3 | LOC_Os01g35100.1, LOC_Os01g35120.1, LOC_Os01g44240.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G173700 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0403599, Pt_Chr0403600, Pt_Chr0404536, Pt_Chr0404560 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G878300, Tel5E01G877500 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC3AG014990, gene_TRIDC4BG014250 ... |
| Poaceae | Triticum aestivum | 11 | TraesCS3A02G521400.1.cds1, TraesCS3B02G139400.1.cds1 ... |