Basic Information
Locus ID:
Tel3E01G873600
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 654422025 | 654423386 | - | Tel3E01G873600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.53 | 48,829.39 Da | 41.68 | 104.53 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 50 | 91 | 7.31679E-22 | - |
| Pfam | PF04564 | U-box domain | 46 | 117 | 1.2E-17 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 43 | 119 | 2.25E-26 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 206 | 442 | 4.53E-21 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 45 | 118 | 4.3E-27 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 139 | 444 | 1.9E-20 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 49 | 112 | 1.9E-26 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 45 | 119 | 30.024073 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_037451612.1 | U-box domain-containing protein 21-like [Triticum dicoccoides] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6PS47 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology