Basic Information
Locus ID:
Tel3E01G846300
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 643064481 | 643073934 | - | Tel3E01G846300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 45,592.36 Da | 37.83 | 84.30 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 105 | 345 | 1.43861E-41 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 182 | 221 | 1.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 148 | 177 | 2.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 270 | 307 | 6.3E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 105 | 348 | 2.75E-53 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 69 | 354 | 1.3E-67 | IPR015943 |
| SMART | SM00320 | WD40_4 | 97 | 133 | 75.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 181 | 221 | 4.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 268 | 307 | 3.7E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 137 | 177 | 6.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 224 | 265 | 0.033 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 275 | 316 | 13.85027 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 145 | 177 | 10.126507 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 145 | 177 | 12.145943 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 188 | 230 | 12.413288 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 275 | 307 | 11.022865 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 188 | 224 | 10.047417 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 208 | 222 | 9.1E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 164 | 178 | 9.1E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 294 | 308 | 9.1E-7 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79990.2 | structural molecules. | 0 |
| RefSeq | XP_044352236.1 | uncharacterized protein LOC123072698 isoform X2 [Triticum aestivum] | 0 |
| O35142 | Coatomer subunit beta' OS=Rattus norvegicus OX=10116 GN=Copb2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A077S7C8 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 GN=TRAES_3BF072300130CFD_c1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_8BG0645030, gene-QOZ80_9AG0672230 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_049245 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G005400, Tel3E01G846300 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC3BG003560 |
| Poaceae | Triticum aestivum | 6 | TraesCS1B02G294900.1, TraesCS1D02G284700.1 ... |