Basic Information
Locus ID:
Tel3E01G832200
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Ubiquitin homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 634757889 | 634758563 | - | Tel3E01G832200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 25,567.62 Da | 38.94 | 101.38 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 3 | 62 | 1.4E-10 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 73 | 138 | 1.2E-16 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 151 | 219 | 1.1E-16 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 66 | 137 | 5.07E-15 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 65 | 4.77E-14 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 141 | 219 | 1.7E-20 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 63 | 144 | 5.4E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 145 | 224 | 2.0E-25 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 62 | 9.5E-16 | - |
| SMART | SM00213 | ubq_7 | 68 | 139 | 1.3E-16 | IPR000626 |
| SMART | SM00213 | ubq_7 | 148 | 220 | 1.2E-11 | IPR000626 |
| SMART | SM00213 | ubq_7 | 1 | 65 | 6.1E-9 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 66 | 138 | 16.4723 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 148 | 219 | 16.537624 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 62 | 11.093776 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 201 | 222 | 2.3E-12 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 158 | 178 | 2.3E-12 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.1 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 0 |
| RefSeq | XP_044345776.1 | polyubiquitin-like [Triticum aestivum] | 0 |
| P0CH33 | Polyubiquitin 11 OS=Arabidopsis thaliana OX=3702 GN=UBQ11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A080YTU4 | Ubiquitin-like domain-containing protein OS=Triticum aestivum OX=4565 GN=TRAES_3BF078700070CFD_c1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G832200 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC3BG082050 |
| Poaceae | Triticum aestivum | 2 | TraesCS3B02G567800.1.cds1, TraesCS3B02G569000.1.cds1 |