Basic Information
Locus ID:
Tel3E01G829600
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Ubiquitin homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 632532737 | 632535563 | + | Tel3E01G829600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 33,066.17 Da | 48.63 | 94.19 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 142 | 212 | 7.8E-18 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 76 | 136 | 2.8E-13 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 225 | 295 | 4.3E-25 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 69 | 138 | 4.35E-16 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 137 | 212 | 6.91E-18 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 219 | 297 | 1.55E-26 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 70 | 137 | 1.5E-16 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 138 | 220 | 6.0E-25 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 221 | 298 | 3.3E-31 | - |
| SMART | SM00213 | ubq_7 | 140 | 213 | 1.4E-16 | IPR000626 |
| SMART | SM00213 | ubq_7 | 74 | 139 | 2.7E-9 | IPR000626 |
| SMART | SM00213 | ubq_7 | 223 | 294 | 1.2E-26 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 223 | 298 | 23.875935 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 140 | 212 | 17.103785 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 74 | 136 | 11.638161 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 249 | 274 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 275 | 296 | 5.8E-23 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 254 | 274 | 5.8E-23 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 233 | 253 | 5.8E-23 | IPR019956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 61 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.1 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 0 |
| RefSeq | XP_044343279.1 | polyubiquitin-like [Triticum aestivum] | 0 |
| P0CH33 | Polyubiquitin 11 OS=Arabidopsis thaliana OX=3702 GN=UBQ11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6ERC2 | Ubiquitin-like domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G829600 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC3AG071630 |
| Poaceae | Triticum aestivum | 2 | TraesCS3A02G504600.1, TraesCS3D02G510900.1 |