Basic Information
Locus ID:
Tel3E01G829000
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Ubiquitin homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 632176282 | 632179182 | - | Tel3E01G829000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.70 | 33,183.62 Da | 53.02 | 98.09 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 145 | 215 | 2.1E-18 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 79 | 139 | 8.2E-12 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 226 | 296 | 5.7E-21 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 56 | 140 | 7.46E-16 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 219 | 298 | 1.36E-22 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 140 | 215 | 1.4E-18 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 73 | 140 | 4.4E-15 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 219 | 299 | 2.2E-26 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 141 | 214 | 6.6E-27 | - |
| SMART | SM00213 | ubq_7 | 143 | 216 | 2.2E-17 | IPR000626 |
| SMART | SM00213 | ubq_7 | 77 | 142 | 1.6E-7 | IPR000626 |
| SMART | SM00213 | ubq_7 | 224 | 295 | 4.5E-22 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 109 | 139 | 10.876022 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 143 | 215 | 17.212662 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 224 | 299 | 20.043465 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 255 | 275 | 1.5E-18 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 276 | 297 | 1.5E-18 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 234 | 254 | 1.5E-18 | IPR019956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 61 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.1 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 0 |
| RefSeq | XP_044359711.1 | polyubiquitin-like isoform X1 [Triticum aestivum] | 0 |
| P0CH33 | Polyubiquitin 11 OS=Arabidopsis thaliana OX=3702 GN=UBQ11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6ESB8 | Ubiquitin-like domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0323860.1, HORVU.MOREX.r3.3HG0323890.1 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G829000, Tel3E01G829300 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC3BG081880 |
| Poaceae | Triticum aestivum | 5 | TraesCS3A02G504000.1, TraesCS3B02G567400.1 ... |