Basic Information
Locus ID:
Tel3E01G828900
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
intracellular transport of virus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 632169634 | 632171155 | + | Tel3E01G828900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.37 | 25,460.14 Da | 29.29 | 96.98 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 3 | 66 | 1.5E-14 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 152 | 223 | 3.7E-20 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 76 | 140 | 1.3E-14 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 66 | 2.24E-17 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 142 | 224 | 2.37E-24 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 69 | 140 | 9.01E-16 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 64 | 145 | 2.8E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 146 | 225 | 4.6E-27 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 63 | 1.8E-18 | - |
| SMART | SM00213 | ubq_7 | 150 | 222 | 1.1E-17 | IPR000626 |
| SMART | SM00213 | ubq_7 | 70 | 141 | 1.6E-13 | IPR000626 |
| SMART | SM00213 | ubq_7 | 1 | 65 | 2.8E-12 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 68 | 140 | 15.470632 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 150 | 225 | 20.631401 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 67 | 12.138995 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 160 | 180 | 1.5E-11 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 203 | 224 | 1.5E-11 | IPR019956 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.1 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 0 |
| RefSeq | XP_044359708.1 | polyubiquitin-like [Triticum aestivum] | 0 |
| P0CH33 | Polyubiquitin 11 OS=Arabidopsis thaliana OX=3702 GN=UBQ11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6H3F9 | Ubiquitin-like domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G828900 |
| Poaceae | Triticum aestivum | 1 | TraesCS3D02G510200.1.cds1 |