HalophFGD

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Basic Information
Locus ID: Tel3E01G766900
Species & Taxonomic ID: Thinopyrum elongatum & 4588
Genome Assembly: GWHABKY00000000
Description: A Receptor for Ubiquitination Targets
Maps and Mapping Data
Chromosome Start End Strand ID
chr3 598450457 598450828 + Tel3E01G766900
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
9.80 13,790.15 Da 48.79 92.03 -0.18
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00646 F-box domain 7 40 0.01 IPR001810
Pfam PF00646 F-box domain 92 115 0.0026 IPR001810
SUPERFAMILY SSF81383 F-box domain 7 48 2.35E-6 IPR036047
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_020176898.1 putative F-box protein At1g53550 [Aegilops tauschii subsp. strangulata] 0
TrEMBL M8CIY4 F-box domain-containing protein OS=Aegilops tauschii OX=37682 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Asparagaceae Asparagus officinalis 2 AsparagusV1_04.129.V1.1, AsparagusV1_04.132.V1.1
Poaceae Echinochloa crus-galli 12 AH01.2284, AH01.2287, AH02.3093, BH01.2576, BH01.2577 ...
BH01.2600, BH01.2606, BH06.2373, BH06.2374, BH08.484, CH01.2781, CH01.2785
Poaceae Hordeum vulgare 5 HORVU.MOREX.r3.2HG0112950.1.CDS1 ...
HORVU.MOREX.r3.5HG0509830.1.CDS1, HORVU.MOREX.r3.5HG0509860.1.CDS1, HORVU.MOREX.r3.6HG0540080.1.CDS1, HORVU.MOREX.r3.6HG0631840.1.CDS1
Poaceae Lolium multiflorum 23 gene-QYE76_000501, gene-QYE76_002124, gene-QYE76_005967 ...
gene-QYE76_014992, gene-QYE76_018899, gene-QYE76_023242, gene-QYE76_023243, gene-QYE76_025428, gene-QYE76_025429, gene-QYE76_035401, gene-QYE76_047095, gene-QYE76_056057, gene-QYE76_058287, gene-QYE76_061402, gene-QYE76_063367, gene-QYE76_063958, gene-QYE76_065546, gene-QYE76_067195, gene-QYE76_068002, gene-QYE76_068005, gene-QYE76_071518, gene-QYE76_071649, gene-QYE76_071650
Poaceae Oryza coarctata 2 Oco09G017100, Oco09G017160
Poaceae Oryza sativa 1 LOC_Os05g49450.1
Poaceae Paspalum vaginatum 1 gene-BS78_01G236300
Poaceae Puccinellia tenuiflora 14 Pt_Chr0100309, Pt_Chr0100311, Pt_Chr0100312, Pt_Chr0100314 ...
Pt_Chr0100315, Pt_Chr0100317, Pt_Chr0100318, Pt_Chr0100321, Pt_Chr0100542, Pt_Chr0102698, Pt_Chr0200532, Pt_Chr0504632, Pt_Chr0600920, Pt_Chr0700610
Poaceae Thinopyrum elongatum 6 Tel2E01G288800, Tel3E01G766900, Tel4E01G067300 ...
Tel4E01G067500, Tel4E01G600200, Tel5E01G590100
Poaceae Triticum aestivum 16 TraesCS2A02G142000.1, TraesCS2A02G551700.1.cds1 ...
TraesCS2A02G567200.1.cds1, TraesCS2B02G167200.1.cds1, TraesCS2D02G127900.1.cds1, TraesCS3B02G520900.1, TraesCS3D02G472500.1.cds1, TraesCS4B02G034200.1.cds1, TraesCS5B02G387400.1.cds1, TraesCS5D02G379400.1.cds1, TraesCS6B02G000800.1.cds1, TraesCS6B02G009900.1.cds1, TraesCS6B02G042700.1.cds1, TraesCS6B02G042800.1.cds1, TraesCS6D02G006100.1.cds1, TraesCS6D02G034300.1.cds1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.