HalophFGD

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Basic Information
Locus ID: Tel3E01G720600
Species & Taxonomic ID: Thinopyrum elongatum & 4588
Genome Assembly: GWHABKY00000000
Description:
Maps and Mapping Data
Chromosome Start End Strand ID
chr3 569066541 569068370 - Tel3E01G720600
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.19 59,461.81 Da 56.77 95.93 -0.28
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00646 F-box domain 7 40 0.0019 IPR001810
SUPERFAMILY SSF81383 F-box domain 3 45 6.41E-9 IPR036047
Gene3D G3DSA:1.20.1280.50 - 2 44 1.3E-5 -
ProSiteProfiles PS50181 F-box domain profile. 5 40 8.649649 IPR001810
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT4G00160.1 F-box/RNI-like/FBD-like domains-containing protein. 0
RefSeq XP_051222031.1 putative F-box/LRR-repeat protein At5g41840 [Lolium perenne] 0
Swiss-Prot Q8LF09 F-box/FBD/LRR-repeat protein At4g00160 OS=Arabidopsis thaliana OX=3702 GN=At4g00160 PE=2 SV=2 0
TrEMBL A0A077RSA6 F-box domain-containing protein OS=Triticum aestivum OX=4565 GN=TRAES_3BF116200080CFD_c1 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Amaranthaceae Chenopodium quinoa 1 CQ.Regalona.r1.3AG0024140
Poaceae Echinochloa crus-galli 12 AH04.2072, BH04.2135, BH04.2138, BH04.2139, BH04.2145 ...
CH02.2882, CH02.2897, CH04.2464, CH04.2731, CH05.2892, CH09.2705, CH09.2710
Poaceae Eleusine coracana subsp. coracana 15 gene-QOZ80_5AG0376310, gene-QOZ80_5BG0423530 ...
gene-QOZ80_9AG0671040, gene-QOZ80_9AG0690870, gene-QOZ80_9AG0690880, gene-QOZ80_9AG0690890, gene-QOZ80_9AG0690920, gene-QOZ80_9AG0690960, gene-QOZ80_9AG0691020, gene-QOZ80_9BG0715300, gene-QOZ80_9BG0717160, gene-QOZ80_9BG0717180, gene-QOZ80_9BG0717190, gene-QOZ80_9BG0717200, gene-QOZ80_9BG0717310
Poaceae Hordeum vulgare 5 HORVU.MOREX.r3.2HG0110910.1 ...
HORVU.MOREX.r3.3HG0313920.1.CDS1, HORVU.MOREX.r3.3HG0313940.1.CDS1, HORVU.MOREX.r3.3HG0313960.1.CDS1, HORVU.MOREX.r3.3HG0313970.1.CDS1
Poaceae Lolium multiflorum 32 gene-QYE76_007082, gene-QYE76_009132, gene-QYE76_009145 ...
gene-QYE76_028966, gene-QYE76_036423, gene-QYE76_036427, gene-QYE76_036428, gene-QYE76_036429, gene-QYE76_036430, gene-QYE76_038430, gene-QYE76_038432, gene-QYE76_038433, gene-QYE76_038601, gene-QYE76_038605, gene-QYE76_039894, gene-QYE76_039897, gene-QYE76_048047, gene-QYE76_049316, gene-QYE76_057696, gene-QYE76_057708, gene-QYE76_058077, gene-QYE76_058373, gene-QYE76_058394, gene-QYE76_059048, gene-QYE76_059050, gene-QYE76_060122, gene-QYE76_060933, gene-QYE76_065809, gene-QYE76_065814, gene-QYE76_065817, gene-QYE76_065822, gene-QYE76_065997
Poaceae Oryza coarctata 4 Oco07G001790, Oco07G002090, Oco21G006700, Oco22G010260
Poaceae Oryza sativa 13 LOC_Os02g28600.1, LOC_Os04g16160.1, LOC_Os05g46590.1 ...
LOC_Os08g24190.1, LOC_Os10g27400.1, LOC_Os11g33190.1, LOC_Os11g33220.1, LOC_Os11g33250.1, LOC_Os11g42230.1, LOC_Os11g42240.1, LOC_Os11g42270.1, LOC_Os11g42280.1, LOC_Os11g42300.1
Poaceae Paspalum vaginatum 7 gene-BS78_05G225600, gene-BS78_05G225700 ...
gene-BS78_05G225900, gene-BS78_09G116100, gene-BS78_09G116300, gene-BS78_10G066500, gene-BS78_10G066600
Poaceae Puccinellia tenuiflora 25 Pt_Chr0103367, Pt_Chr0103372, Pt_Chr0201689, Pt_Chr0201691 ...
Pt_Chr0201692, Pt_Chr0201698, Pt_Chr0305502, Pt_Chr0404387, Pt_Chr0500107, Pt_Chr0500134, Pt_Chr0500208, Pt_Chr0601131, Pt_Chr0601132, Pt_Chr0601137, Pt_Chr0601140, Pt_Chr0601141, Pt_Chr0601142, Pt_Chr0601144, Pt_Chr0601145, Pt_Chr0601146, Pt_Chr0601147, Pt_Chr0700042, Pt_Chr0700227, Pt_Chr0700413, Pt_Chr0700416
Poaceae Sporobolus alterniflorus 1 Chr16G004490
Poaceae Thinopyrum elongatum 4 Tel1E01G132800, Tel2E01G165500, Tel3E01G720600 ...
Tel3E01G721500
Poaceae Triticum dicoccoides 5 gene_TRIDC3AG058470, gene_TRIDC3BG072530 ...
gene_TRIDC3BG072570, gene_TRIDC3BG072620, gene_TRIDC7BG014460
Poaceae Triticum aestivum 20 TraesCS1D02G064600.1.cds1, TraesCS1D02G064900.1 ...
TraesCS2B02G089900.1.cds1, TraesCS2D02G073300.1.cds1, TraesCS3A02G411400.1.cds1, TraesCS3A02G455200.1, TraesCS3B02G444800.1.cds1, TraesCS3B02G494000.1, TraesCS3B02G494200.1.cds1, TraesCS3B02G494300.1, TraesCS3B02G494700.1, TraesCS3B02G494800.1.cds1, TraesCS3B02G495200.1.cds1, TraesCS3B02G495300.1.cds1, TraesCS3B02G495500.1, TraesCS3D02G405700.1.cds1, TraesCS3D02G447900.1.cds1, TraesCS3D02G448400.1.cds1, TraesCS3D02G448500.1, TraesCS7D02G020200.1.cds1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.