Basic Information
Locus ID:
Tel3E01G695800
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Short Name:
RHC1A
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 556192250 | 556194552 | - | Tel3E01G695800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.58 | 32,328.78 Da | 71.07 | 50.24 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 188 | 229 | 2.60229E-25 | - |
| Pfam | PF13639 | Ring finger domain | 187 | 229 | 1.2E-11 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 6 | 37 | 1.7E-9 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 169 | 235 | 2.87E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 150 | 236 | 2.5E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 188 | 228 | 1.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 188 | 229 | 12.194218 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 289 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_044359214.1 | probable E3 ubiquitin-protein ligase RHC1A [Triticum aestivum] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A453GE27 | RING-type E3 ubiquitin transferase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology