Basic Information
Locus ID:
Tel3E01G632500
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Nuclear transport factor 2 (NTF2) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 519355215 | 519358868 | + | Tel3E01G632500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.27 | 59,337.43 Da | 43.41 | 55.15 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00590 | RRM_SF | 331 | 389 | 1.43459E-10 | - |
| CDD | cd00780 | NTF2 | 14 | 136 | 5.97526E-42 | IPR018222 |
| Pfam | PF02136 | Nuclear transport factor 2 (NTF2) domain | 19 | 135 | 9.6E-26 | IPR002075 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 331 | 389 | 2.0E-9 | IPR000504 |
| SUPERFAMILY | SSF54427 | NTF2-like | 14 | 136 | 9.25E-34 | IPR032710 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 324 | 405 | 8.19E-14 | IPR035979 |
| Gene3D | G3DSA:3.10.450.50 | - | 9 | 138 | 3.2E-33 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 305 | 412 | 4.4E-13 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 330 | 402 | 3.0E-9 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 329 | 406 | 10.377244 | IPR000504 |
| ProSiteProfiles | PS50177 | Nuclear transport factor 2 domain profile. | 18 | 135 | 29.934824 | IPR018222 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 324 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 453 | 492 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 492 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 517 | 535 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 288 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 253 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 506 | 546 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 324 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60980.2 | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain. | 0 |
| RefSeq | XP_037415115.1 | nuclear transport factor 2-like isoform X2 [Triticum dicoccoides] | 0 |
| Q9FME2 | Nuclear transport factor 2 OS=Arabidopsis thaliana OX=3702 GN=NTF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6FTZ9 | G3BP-like protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology