Basic Information
Locus ID:
Tel3E01G624000
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 515504425 | 515510347 | + | Tel3E01G624000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.89 | 163,331.92 Da | 40.15 | 105.09 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 899 | 1189 | 2.48571E-84 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1212 | 1432 | 7.88387E-114 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 285 | 570 | 4.0335E-88 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 600 | 806 | 1.19233E-96 | - |
| Pfam | PF00005 | ABC transporter | 1231 | 1379 | 3.3E-28 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 912 | 1141 | 3.1E-25 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 284 | 548 | 2.5E-18 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 625 | 758 | 7.8E-15 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 625 | 820 | 4.12E-49 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 899 | 1190 | 1.09E-46 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 277 | 575 | 8.76E-26 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1204 | 1439 | 5.24E-64 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1197 | 1451 | 1.3E-77 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 870 | 1194 | 6.7E-53 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 237 | 583 | 1.6E-40 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 601 | 855 | 5.1E-67 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1240 | 1433 | 2.1E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 632 | 806 | 1.7E-12 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 608 | 829 | 20.441628 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 901 | 1177 | 34.257526 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1216 | 1448 | 16.780182 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 285 | 562 | 27.766146 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 731 | 745 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_044351178.1 | putative ABC transporter C family member 15 isoform X1 [Triticum aestivum] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6FTS8 | ABC transporter C family member 15 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology