Basic Information
Locus ID:
Tel3E01G602100
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 500374495 | 500375748 | + | Tel3E01G602100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.25 | 44,566.26 Da | 54.04 | 109.06 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 18 | 69 | 6.62145E-19 | - |
| Pfam | PF04564 | U-box domain | 14 | 93 | 6.1E-20 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 9 | 93 | 6.28E-26 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 122 | 381 | 4.4E-20 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 98 | 1.2E-27 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 101 | 230 | 1.8E-7 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 234 | 396 | 3.0E-11 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 17 | 90 | 1.1E-26 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 13 | 97 | 33.25275 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 281 | 324 | 9.7474 | IPR000225 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_048568365.1 | E3 ubiquitin-protein ligase PUB23-like [Triticum urartu] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6ELD9 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology