Basic Information
Locus ID:
Tel3E01G588700
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
catalytic domain of ctd-like phosphatases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 492131096 | 492140939 | - | Tel3E01G588700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 82,001.78 Da | 46.49 | 88.36 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00035 | Double-stranded RNA binding motif | 546 | 590 | 3.6E-7 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 271 | 383 | 1.5E-8 | IPR004274 |
| SUPERFAMILY | SSF56784 | HAD-like | 152 | 407 | 9.47E-24 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 528 | 591 | 8.93E-12 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 655 | 730 | 5.13E-12 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 150 | 412 | 2.0E-27 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 525 | 596 | 5.3E-8 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 656 | 722 | 1.2E-7 | - |
| SMART | SM00577 | forpap2 | 214 | 390 | 1.5E-10 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 654 | 720 | 4.4E-4 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 527 | 591 | 2.5E-5 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 155 | 403 | 18.240643 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 653 | 721 | 11.552683 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 526 | 592 | 11.212814 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 619 | 648 | - | - |
| Coils | Coil | Coil | 573 | 593 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_044358556.1 | RNA polymerase II C-terminal domain phosphatase-like 2 [Triticum aestivum] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A453FYL2 | protein-serine/threonine phosphatase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology