Basic Information
Locus ID:
Tel3E01G548500
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 460658148 | 460658531 | - | Tel3E01G548500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.08 | 13,393.85 Da | 44.61 | 122.76 | 0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 69 | 112 | 1.1E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 64 | 118 | 6.01E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 33 | 116 | 2.4E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 69 | 111 | 7.0E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 69 | 112 | 11.574592 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44578.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_020182006.1 | RING-H2 finger protein ATL56-like [Aegilops tauschii subsp. strangulata] | 0 |
| Q9M0R7 | RING-H2 finger protein ATL39 OS=Arabidopsis thaliana OX=3702 GN=ATL39 PE=2 SV=1 | 0 | |
| TrEMBL | R7WFN9 | RING-type E3 ubiquitin transferase OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH02.3710, BH02.3248, CH02.3997 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0038210, gene-QOZ80_1BG0088200 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0297780.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_055654 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G319900 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr05G027310 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G548500, Tel3E01G552500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG049770, gene_TRIDC3BG056070 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G345400.1.cds1, TraesCS3B02G377500.1.cds1 ... |