Basic Information
Locus ID:
Tel3E01G544500
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Short Name:
PUX4
Description:
Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 458800593 | 458801072 | + | Tel3E01G544500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.20 | 14,220.97 Da | 72.10 | 64.39 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00789 | UBX domain | 84 | 113 | 1.1E-7 | IPR001012 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 39 | 112 | 6.46E-13 | IPR029071 |
| SUPERFAMILY | SSF102848 | NSFL1 (p97 ATPase) cofactor p47, SEP domain | 2 | 52 | 6.02E-6 | IPR036241 |
| Gene3D | G3DSA:3.10.20.90 | - | 31 | 128 | 2.4E-18 | - |
| ProSiteProfiles | PS50033 | UBX domain profile. | 80 | 111 | 12.509007 | IPR001012 |
| ProSiteProfiles | PS51399 | SEP domain profile. | 1 | 30 | 8.923403 | IPR012989 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 70 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04210.1 | plant UBX domain containing protein 4. Arabidopsis thaliana CDC48-interacting UBX-domain protein (PUX4) | 0 |
| RefSeq | XP_037457968.1 | plant UBX domain-containing protein 4-like [Triticum dicoccoides] | 0 |
| Q8RWU7 | Plant UBX domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=PUX4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453SHY1 | UBX domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G544500, Tel7E01G621200 |