Basic Information
Locus ID:
Tel3E01G542100
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 457011738 | 457014372 | + | Tel3E01G542100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 23,762.32 Da | 54.69 | 50.19 | -0.86 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 162 | 204 | 1.4E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 159 | 211 | 2.83E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 158 | 213 | 2.8E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 164 | 204 | 4.9E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 164 | 204 | 11.66311 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 76 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15790.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037414553.1 | E3 ubiquitin-protein ligase At3g02290-like [Triticum dicoccoides] | 0 |
| Q8LE94 | E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g02290 PE=2 SV=1 | 0 | |
| TrEMBL | W5D6D5 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 GN=TRAES_3BF012000020CFD_c1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH01.1083, BH01.1611, CH01.1684 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0225980, gene-QOZ80_3BG0271890 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0125040.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_016282, gene-QYE76_057527 |
| Poaceae | Oryza coarctata | 2 | Oco05G017780, Oco06G018500 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g40170.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G159200 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0103848, Pt_Chr0103850, Pt_Chr0103872 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G010320, Chr04G014390, Chr07G022890, Chr12G026540 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G331700, Tel3E01G542100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG048860, gene_TRIDC3BG055100 |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G168700.1, TraesCS2B02G195000.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb049930_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-33905 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g963 |