Basic Information
Locus ID:
Tel3E01G521100
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 444413806 | 444418892 | - | Tel3E01G521100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.82 | 55,160.46 Da | 49.15 | 95.64 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 20 | 61 | 2.1E-8 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 55 | 358 | 1.33E-14 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 17 | 72 | 7.98E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 8 | 83 | 4.0E-9 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 168 | 415 | 1.3E-10 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 18 | 68 | 11.775988 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 448 | 477 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 477 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00315.1 | F-box/RNI-like/FBD-like domains-containing protein. | 0 |
| RefSeq | XP_037406947.1 | FBD-associated F-box protein At4g10400-like [Triticum dicoccoides] | 0 |
| Q3EAE5 | Putative F-box/FBD/LRR-repeat protein At4g00315 OS=Arabidopsis thaliana OX=3702 GN=At4g00315 PE=4 SV=1 | 0 | |
| TrEMBL | A0A3B6EJP9 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Plantaginaceae | Plantago ovata | 1 | Pov_00022742 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.3532, AH02.3533, CH02.2963, CH02.2964 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0294500.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_056019 |
| Poaceae | Oryza coarctata | 2 | Oco01G022240, Oco02G022850 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g57920.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G298500, gene-BS78_03G302400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0601377, Pt_Chr0601696 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G007540, Chr05G025970 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G521000, Tel3E01G521100 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC3AG046870, gene_TRIDC3AG046890 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS3A02G326100.1, TraesCS3A02G326200.1 ... |