Basic Information
Locus ID:
Tel3E01G511100
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 438841295 | 438851181 | - | Tel3E01G511100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.08 | 138,313.11 Da | 53.20 | 71.25 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 551 | 872 | 1.05474E-85 | - |
| CDD | cd18793 | SF2_C_SNF | 1122 | 1231 | 7.24898E-52 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 568 | 950 | 5.2E-67 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1122 | 1221 | 1.4E-14 | IPR001650 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 986 | 1023 | 3.4E-7 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 534 | 872 | 4.48E-44 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 881 | 1247 | 4.21E-49 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 983 | 1035 | 1.85E-10 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 737 | 873 | 6.7E-27 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 524 | 612 | 1.3E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 995 | 1038 | 3.4E-8 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 634 | 732 | 6.3E-11 | IPR038718 |
| Gene3D | G3DSA:1.20.120.850 | - | 899 | 994 | 6.1E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 1112 | 1254 | 7.8E-50 | IPR027417 |
| SMART | SM00487 | ultradead3 | 547 | 842 | 4.4E-27 | IPR014001 |
| SMART | SM00184 | ring_2 | 986 | 1024 | 1.5E-6 | IPR001841 |
| SMART | SM00490 | helicmild6 | 1138 | 1221 | 6.2E-18 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 624 | 834 | 13.269253 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1113 | 1257 | 13.32229 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 986 | 1023 | 10.748424 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 1001 | 1010 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 722 | 769 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 405 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 726 | 746 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_044358076.1 | helicase-like transcription factor CHR28 isoform X1 [Triticum aestivum] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453FP60 | Helicase ATP-binding domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology