HalophFGD

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Basic Information
Locus ID: Tel3E01G464100
Species & Taxonomic ID: Thinopyrum elongatum & 4588
Genome Assembly: GWHABKY00000000
Description: FBD
Maps and Mapping Data
Chromosome Start End Strand ID
chr3 400713510 400715289 + Tel3E01G464100
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.79 48,386.82 Da 49.15 92.73 -0.24
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF08387 FBD 345 384 1.3E-6 IPR006566
SUPERFAMILY SSF52047 RNI-like 115 329 1.14E-8 -
SUPERFAMILY SSF81383 F-box domain 12 53 2.35E-8 IPR036047
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 12 245 3.3E-12 IPR032675
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT2G26860.1 FBD, F-box and Leucine Rich Repeat domains containing protein. 0
RefSeq XP_044353427.1 FBD-associated F-box protein At4g10400-like [Triticum aestivum] 0
Swiss-Prot Q84X02 FBD-associated F-box protein At2g26860 OS=Arabidopsis thaliana OX=3702 GN=At2g26860 PE=2 SV=2 0
TrEMBL N1QYG3 Uncharacterized protein OS=Aegilops tauschii OX=37682 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 10 AH02.3059, AH02.3061, AH06.1307, BH02.3141, BH02.3142 ...
BH02.3147, CH02.3377, CH02.3378, CH02.3379, CH09.2419
Poaceae Eleusine coracana subsp. coracana 3 gene-QOZ80_1AG0031990, gene-QOZ80_1BG0082200 ...
gene-QOZ80_1BG0082210
Poaceae Hordeum vulgare 2 HORVU.MOREX.r3.3HG0286570.1, HORVU.MOREX.r3.3HG0286590.1
Poaceae Lolium multiflorum 6 gene-QYE76_055442, gene-QYE76_055443, gene-QYE76_055444 ...
gene-QYE76_055468, gene-QYE76_055469, gene-QYE76_055471
Poaceae Oryza coarctata 3 Oco01G019960, Oco01G019970, Oco02G019800
Poaceae Oryza sativa 2 LOC_Os01g52970.1, LOC_Os01g52980.1
Poaceae Paspalum vaginatum 1 gene-BS78_03G264700
Poaceae Puccinellia tenuiflora 7 Pt_Chr0505500, Pt_Chr0506047, Pt_Chr0506051, Pt_Chr0602100 ...
Pt_Chr0602121, Pt_Chr0605168, Pt_Chr0705071
Poaceae Sporobolus alterniflorus 4 Chr02G010550, Chr03G015420, Chr05G022840, Chr08G015490
Poaceae Thinopyrum elongatum 2 Tel3E01G464000, Tel3E01G464100
Poaceae Triticum dicoccoides 4 gene_TRIDC3AG041760, gene_TRIDC3AG041770 ...
gene_TRIDC3BG047150, gene_TRIDC3BG047170
Poaceae Triticum aestivum 6 TraesCS3A02G282200.1, TraesCS3A02G282300.1 ...
TraesCS3B02G315900.1, TraesCS3B02G316000.1, TraesCS3D02G282200.1, TraesCS3D02G282300.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.