Basic Information
Locus ID:
Tel3E01G436500
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
E3 ubiquitin ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 374274378 | 374285223 | + | Tel3E01G436500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 139,392.91 Da | 45.75 | 76.22 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 1119 | 1162 | 9.16897E-18 | - |
| CDD | cd12108 | Hr-like | 649 | 808 | 3.39233E-27 | - |
| CDD | cd12108 | Hr-like | 298 | 426 | 2.51875E-19 | - |
| CDD | cd12108 | Hr-like | 41 | 167 | 7.56675E-33 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 295 | 427 | 2.7E-7 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 991 | 1066 | 4.3E-18 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 45 | 169 | 4.5E-13 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 647 | 809 | 9.8E-8 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1167 | 1224 | 6.9E-24 | IPR039512 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1118 | 1165 | 2.78E-7 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1057 | 1112 | 3.27E-15 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 983 | 1047 | 1.31E-16 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1115 | 1163 | 2.2E-8 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 644 | 869 | 6.6E-25 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 297 | 444 | 1.3E-18 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 37 | 187 | 1.7E-34 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1191 | 1232 | 6.1E-17 | - |
| SMART | SM00184 | ring_2 | 1120 | 1161 | 1.7E-5 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 984 | 1053 | 25.740093 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1056 | 1119 | 29.816021 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1120 | 1161 | 11.235273 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 550 | 572 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 879 | 904 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_044357530.1 | zinc finger protein BRUTUS-like [Triticum aestivum] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A453FBW8 | CHY-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology